
Genomics Core Facilities in Ghana
Engineering Excellence & Technical Support
Genomics Core Facilities solutions for Research & Discovery (R&D). High-standard technical execution following OEM protocols and local regulatory frameworks.
Next-Generation Sequencing (NGS) for Disease Research
Empowering Ghanaian researchers with cutting-edge NGS technologies for comprehensive genomic analysis, accelerating discoveries in infectious diseases, non-communicable disorders, and agricultural genomics. Our facility provides access to leading platforms for whole-genome, exome, and targeted sequencing, enabling high-throughput and cost-effective data generation.
Bioinformatics and Data Analysis Services
Bridging the gap between raw genomic data and actionable insights. Our expert bioinformatics team offers comprehensive support for data processing, variant calling, annotation, and interpretation. We provide tailored pipelines and statistical analysis for diverse research projects, fostering a deeper understanding of genetic factors influencing health and disease in Ghana.
Genomic Sample Management and Archiving
Ensuring the integrity and long-term preservation of precious genomic samples. Our facility adheres to stringent protocols for sample collection, processing, DNA/RNA extraction, and secure long-term storage. We offer robust sample management systems and archiving services, safeguarding valuable genetic resources for future research endeavors in Ghana and beyond.
What Is Genomics Core Facilities In Ghana?
Genomics Core Facilities in Ghana represent specialized service units established to provide advanced genomic technologies, instrumentation, and expertise to researchers and institutions across the country. These facilities are crucial for enabling high-throughput and sophisticated molecular analyses, particularly in areas of biological and biomedical research. They operate by offering access to state-of-the-art equipment and technical support, allowing researchers to conduct complex genomic studies without the need for individual institutional investment in expensive infrastructure. The overarching goal is to democratize access to cutting-edge genomic capabilities, foster collaborative research, and advance scientific discovery within Ghana and the broader African continent. The services typically involve sample processing, library preparation for various sequencing platforms (e.g., Illumina, Oxford Nanopore), next-generation sequencing (NGS) execution, data quality control, and often basic bioinformatics analysis.
| Who Needs Genomics Core Facilities? | Typical Use Cases | |||||
|---|---|---|---|---|---|---|
| Academic and Research Institutions: Universities, medical schools, and research centers conducting fundamental and applied biological research. | Disease Surveillance and Public Health: Identifying pathogens, tracking infectious disease outbreaks, understanding antimicrobial resistance, and characterizing disease vectors. | Medical Research and Diagnostics: Investigating genetic basis of diseases (e.g., inherited disorders, cancer), pharmacogenomics, and developing diagnostic tools. | Agricultural Sector: Enhancing crop breeding, understanding plant-pathogen interactions, and improving livestock genetics. | Environmental Studies: Biodiversity assessment, ecological monitoring, and studying the impact of environmental changes on organisms. | Biotechnology Companies: Early-stage research and development requiring genomic insights for product development. | Government Agencies: Public health bodies, environmental protection agencies, and agricultural ministries requiring genomic data for policy and decision-making. |
| Whole Genome/Exome Sequencing: Identifying genetic variants associated with diseases, understanding evolutionary history, and characterizing microbial genomes. | RNA Sequencing (RNA-Seq): Quantifying gene expression levels to study cellular responses, identify biomarkers, and understand developmental processes. | Metagenomics: Analyzing genetic material from environmental or host-associated microbial communities to understand their composition and function. | Epigenomics (e.g., ChIP-Seq, Bisulfite Sequencing): Studying modifications to DNA and histones that regulate gene expression. | Genotyping: Identifying specific genetic markers for applications in breeding, population genetics, and association studies. | Single-cell Genomics: Analyzing the genomic profiles of individual cells to understand cellular heterogeneity and development. | Long-read Sequencing (e.g., Nanopore): Resolving complex genomic regions, identifying structural variants, and de novo genome assembly. |
Key Components of Genomics Core Facilities in Ghana:
- Advanced Instrumentation: Access to high-throughput sequencers (e.g., Illumina NovaSeq, MiSeq; Oxford Nanopore MinION, PromethION), fragment analyzers, qPCR machines, and associated sample preparation robotics.
- Expert Technical Support: Provision of skilled personnel to guide researchers through experimental design, sample submission, library preparation protocols, instrument operation, and initial data interpretation.
- Standardized Protocols: Development and implementation of validated workflows for various genomic applications to ensure reproducibility and data integrity.
- Bioinformatics Support: Basic to intermediate computational support for data processing, quality assessment, alignment, variant calling, and gene expression analysis, often through shared resources or collaborations.
- Training and Education: Workshops and training sessions to enhance the capacity of local researchers in genomic techniques and data analysis.
- Collaborative Environment: Facilitating interdisciplinary research by bringing together researchers from diverse fields and institutions.
Who Needs Genomics Core Facilities In Ghana?
Genomics core facilities are essential for advancing scientific research and healthcare in Ghana. These specialized centers provide access to cutting-edge genomic technologies, expertise, and services that are often beyond the capacity of individual research groups or institutions. Their establishment would significantly boost local research capabilities, foster innovation, and contribute to addressing Ghana's unique health and agricultural challenges. By democratizing access to high-throughput sequencing, genotyping, bioinformatics analysis, and other genomic services, core facilities empower researchers to conduct more sophisticated studies, leading to discoveries with direct societal impact. They also play a crucial role in training the next generation of Ghanaian scientists in modern genomic techniques and data interpretation, building a sustainable research ecosystem. The demand for these services spans across academic research, clinical diagnostics, public health initiatives, and agricultural development, making a strong case for their necessity.
| Customer Type | Key Departments/Units | Primary Needs/Applications |
|---|---|---|
| Academic Research Institutions | Molecular Biology, Genetics, Biochemistry, Biomedical Sciences, Public Health, Agriculture, Veterinary Medicine, Environmental Science | Basic research into disease mechanisms, drug discovery, population genetics, crop improvement, livestock breeding, biodiversity studies, environmental monitoring. |
| Clinical Diagnostic Laboratories | Pathology, Microbiology, Hematology, Oncology, Genetics Counseling | Diagnostic testing for infectious diseases (e.g., malaria, COVID-19, TB), inherited disorders, cancer genomics for personalized treatment, pathogen surveillance. |
| Public Health Agencies | Epidemiology, Disease Surveillance Units, National Public Health Reference Laboratories | Outbreak investigations, tracking disease transmission, antimicrobial resistance surveillance, vaccine efficacy studies, genomic epidemiology. |
| Agricultural Research Institutes | Plant Breeding, Animal Science, Agronomy, Soil Science | Crop trait improvement (e.g., drought tolerance, disease resistance), livestock disease diagnostics and breeding, understanding soil microbial communities, food security research. |
| Pharmaceutical and Biotechnology Companies (emerging) | Research & Development, Quality Control | Drug discovery and development, biomarker identification, pharmacogenomics, quality assurance of biologics. |
| Environmental Research Organizations | Ecology, Conservation Biology, Environmental Health | Environmental DNA (eDNA) analysis for biodiversity assessment, understanding microbial roles in ecosystems, biomonitoring, climate change impact studies. |
Target Customers and Departments for Genomics Core Facilities in Ghana
- Academic Research Institutions
- Clinical Diagnostic Laboratories
- Public Health Agencies
- Agricultural Research Institutes
- Pharmaceutical and Biotechnology Companies (emerging)
- Environmental Research Organizations
Genomics Core Facilities Process In Ghana
Genomics core facilities in Ghana are crucial for advancing biological research and development. The workflow, from an initial inquiry to the final execution of a genomic service, involves several distinct stages designed to ensure clarity, efficiency, and data integrity. This process typically begins with a potential user expressing interest in a specific genomic service. The facility then engages in consultation to understand the project's requirements, sample types, and desired outcomes. Following this, a formal proposal or quotation is prepared, outlining the scope of work, estimated costs, and timelines. Once approved, sample submission protocols are detailed, and samples are carefully collected, prepared, and transported to the facility. The core facility then performs the requested genomic analysis, which can include DNA/RNA extraction, sequencing (various types like whole-genome, exome, RNA-Seq, amplicon sequencing), genotyping, or other specialized services. Data is meticulously processed, quality controlled, and analyzed. Finally, the results are delivered to the user in a clear and interpretable format, often accompanied by a detailed report, and ongoing support may be provided.
| Stage | Description | Key Activities | Responsible Party |
|---|---|---|---|
| Inquiry and Initial Consultation | The user expresses interest in a genomic service. | Discuss project needs, sample types, feasibility, and potential services. Provide general information about facility capabilities. | User, Genomics Core Facility Staff |
| Project Planning and Quotation | Detailed planning and cost estimation for the project. | Define specific experimental design, select appropriate technologies, estimate reagent and labor costs, and generate a formal quotation/proposal. | Genomics Core Facility Staff, User (for approval) |
| Sample Submission and Preparation | Samples are prepared and submitted according to facility guidelines. | User collects, stores, and transports samples as per facility protocol. Facility receives, logs, and potentially performs initial sample quality checks or preparation (e.g., DNA/RNA extraction). | User, Genomics Core Facility Staff |
| Genomic Analysis Execution | The core facility performs the requested genomic analyses. | Library preparation, sequencing (e.g., Illumina, Nanopore), genotyping, PCR amplification, etc., depending on the service. | Genomics Core Facility Staff |
| Data Processing and Quality Control | Raw data is processed and assessed for quality. | Demultiplexing, base calling, adapter trimming, read quality assessment, alignment to reference genomes, variant calling (initial steps). | Genomics Core Facility Staff |
| Data Analysis and Interpretation | In-depth analysis to derive meaningful biological insights. | Differential gene expression analysis, pathway analysis, variant annotation, phylogenetic analysis, statistical modeling, generation of figures and tables. | Genomics Core Facility Staff, User (for biological interpretation) |
| Results Delivery and Reporting | The final results and analysis are communicated to the user. | Delivery of raw data files, processed data, and a comprehensive report detailing methods, results, and interpretations. May include presentations. | Genomics Core Facility Staff, User |
| Post-Analysis Support | Ongoing assistance and collaboration after data delivery. | Answering follow-up questions, assisting with further interpretation, troubleshooting, or planning future experiments. | Genomics Core Facility Staff, User |
Genomics Core Facilities Process in Ghana: Key Stages
- Inquiry and Initial Consultation
- Project Planning and Quotation
- Sample Submission and Preparation
- Genomic Analysis Execution
- Data Processing and Quality Control
- Data Analysis and Interpretation
- Results Delivery and Reporting
- Post-Analysis Support
Genomics Core Facilities Cost In Ghana
Genomics core facilities in Ghana are emerging, and their pricing structures are still evolving. Several factors influence the cost of genomic services. These include the type of sequencing technology employed (e.g., Sanger, Illumina NovaSeq, PacBio), the complexity of the sample (e.g., human DNA, plant DNA, microbial DNA), the required read length and depth, library preparation costs, data analysis and bioinformatics support, and the overall operational overhead of the facility. Currently, pricing is often quoted in both USD and the local currency, Ghanaian Cedi (GHS). It's important to note that these are indicative ranges and can vary significantly based on the specific provider, project scope, and negotiated terms. As the field matures and infrastructure improves, we can expect more standardized pricing and potentially lower costs.
| Service/Analysis | Indicative Cost Range (USD) | Indicative Cost Range (GHS) | Notes |
|---|---|---|---|
| DNA Extraction (Standard) | $20 - $60 | GHS 240 - GHS 720 | Per sample, depending on sample type. |
| Whole Genome Sequencing (WGS) - Illumina (e.g., NovaSeq, per Gb) | $10 - $50 | GHS 120 - GHS 600 | Depends heavily on sequencing depth and flow cell utilization. |
| Whole Exome Sequencing (WES) - Illumina (per sample) | $300 - $800 | GHS 3,600 - GHS 9,600 | Includes library prep and sequencing. |
| Targeted Sequencing (e.g., gene panels, per sample) | $150 - $400 | GHS 1,800 - GHS 4,800 | Cost varies with the size and complexity of the panel. |
| Sanger Sequencing (per reaction/bi-directional) | $15 - $40 | GHS 180 - GHS 480 | Suitable for sequencing individual genes or PCR products. |
| Basic Data Analysis (e.g., QC, alignment, variant calling - per sample) | $50 - $200 | GHS 600 - GHS 2,400 | Can be higher for complex analyses. |
| Comprehensive Bioinformatics Support (e.g., pathway analysis, reporting - per project) | $500+ | GHS 6,000+ | Highly project-dependent. |
| RNA Sequencing (RNA-Seq) - Illumina (per sample) | $300 - $1,000 | GHS 3,600 - GHS 12,000 | Includes library prep and sequencing, depends on depth. |
Key Pricing Factors for Genomics Core Facilities in Ghana
- Sequencing Technology: Different platforms have varying capital and operational costs.
- Sample Type and Complexity: DNA extraction and library preparation can differ significantly between sample types.
- Sequencing Depth and Read Length: Higher depth and longer reads generally increase costs.
- Library Preparation: Kits and reagents contribute to overall expense.
- Bioinformatics and Data Analysis: The level of computational support required impacts pricing.
- Facility Overhead: Staffing, equipment maintenance, and operational costs are factored in.
- Project Scope and Volume: Larger or more recurring projects may receive volume discounts.
- Reagent Costs: Fluctuations in the global market for reagents can affect local pricing.
Affordable Genomics Core Facilities Options
Core facilities are essential for cutting-edge genomics research, but their cost can be a significant barrier. Fortunately, various affordable options and strategic approaches can make advanced genomic technologies accessible. This includes exploring service-based models, academic collaborations, shared resources, and implementing smart purchasing and utilization practices. Understanding the concept of 'value bundles' and employing effective cost-saving strategies are key to maximizing research impact within budget constraints.
| Strategy | Description | Cost-Saving Mechanism | Potential Benefits | Considerations |
|---|---|---|---|---|
| Value Bundles (e.g., Sequencing Packages) | Core facilities offering pre-defined packages of services at a bundled price, often including library preparation, sequencing, and basic data analysis. | Bulk purchasing, streamlined workflows, predictable costs. | Reduced per-unit cost, simplified budgeting, faster turnaround times. | Ensure the bundle meets specific research needs; customization may incur extra charges. |
| Membership/Subscription Models | Institutions or labs pay a recurring fee for access to core facility services or equipment. | Guaranteed access, operational stability for the core, potential for discounted rates. | Predictable operational costs, prioritized service, access to advanced technologies. | Commitment required; usage may fluctuate, leading to perceived underutilization. |
| Tiered Service Levels | Offering different levels of service (e.g., basic, standard, premium) with corresponding price points based on turnaround time, data complexity, or level of support. | Flexibility for different budgets and project timelines. | Allows researchers to choose a cost-effective option that meets their needs. | Clear definition of service levels is crucial to avoid confusion. |
| Bulk Purchasing Agreements | Negotiating discounts with vendors for reagents, consumables, or sequencing runs when purchasing in large quantities. | Leveraging collective demand for lower prices. | Significant reduction in per-sample costs. | Requires coordination and commitment from multiple users. |
| Internal Process Optimization | Streamlining workflows, automating manual steps, and cross-training personnel within an in-house core facility. | Increased efficiency and reduced labor costs per sample. | Lower operational costs, faster throughput. | Requires investment in automation and training; can be complex to implement. |
Affordable Genomics Core Facility Options & Strategies
- Service-Based Core Facilities: Outsourcing genomic services to specialized companies or university cores. This model can be cost-effective by avoiding capital investment and leveraging their expertise and bulk purchasing power.
- Shared/Collaborative Core Facilities: Institutions pooling resources to establish and maintain shared core facilities. This reduces individual institutional burden and allows for access to higher-end instrumentation.
- Academic Consortia & Networks: Joining or forming consortia of academic institutions to share core facility services, expertise, and even equipment. This can lead to significant cost reductions through shared operational expenses and bulk discounts.
- Internal Core Facilities with Optimized Operations: For institutions with in-house cores, focusing on efficient workflow, automation, and cross-training staff can reduce per-sample costs. Regular equipment maintenance and upgrade strategies are also crucial.
- Cloud-Based Genomics Platforms: Utilizing cloud-based platforms for data analysis and storage can reduce the need for expensive on-premise IT infrastructure.
- Grant Funding & Subsidies: Actively seeking grants that support core facility access or equipment acquisition. Some government or philanthropic organizations offer subsidies for research infrastructure.
- Standardization of Protocols & Reagents: Implementing standardized workflows and utilizing common reagent suppliers across multiple projects or labs can lead to bulk purchasing discounts.
- Strategic Equipment Sharing & Utilization: Maximizing the use of existing equipment by implementing scheduling systems and encouraging inter-departmental sharing.
- Outsourced Data Analysis: In some cases, outsourcing complex bioinformatics analysis can be more cost-effective than hiring dedicated staff, especially for niche expertise.
- Prioritization and Phased Adoption: Focusing on the most critical genomic applications and adopting new technologies incrementally based on research needs and budget availability.
Verified Providers In Ghana
In Ghana's healthcare landscape, discerning trustworthy and credentialed medical providers is paramount for quality patient care. Verified providers, particularly those with credentials like Franance Health, represent a significant step towards ensuring a higher standard of medical service. Franance Health's commitment to stringent vetting processes and their established reputation make them a leading choice for individuals seeking reliable and competent healthcare professionals in Ghana.
| Provider Type | Key Verification Criteria by Franance Health | Benefits to Patients |
|---|---|---|
| Doctors (Specialists & General Practitioners) | Valid medical license, board certification (where applicable), verifiable clinical experience, clean disciplinary record. | Accurate diagnosis, effective treatment plans, access to specialized care, reduced risk of medical errors. |
| Nurses (RNs, ENs) | Registered Nurse/Enrolled Nurse license, relevant training and certifications, background checks, proven patient care experience. | Compassionate and skilled nursing care, efficient patient monitoring, support during recovery, adherence to treatment protocols. |
| Pharmacists | Licensed pharmacist, knowledge of drug interactions and dispensing regulations, ethical practice standards. | Safe and accurate dispensing of medications, expert advice on drug usage and side effects, medication management support. |
| Therapists (Physio, Occupational, etc.) | Relevant professional qualifications and licenses, specialization certifications, practical experience. | Effective rehabilitation programs, improved physical function, pain management, enhanced quality of life. |
Why Franance Health Credentials Matter:
- Rigorous Verification Process: Franance Health employs a multi-faceted verification system for all healthcare professionals, ensuring their licenses, qualifications, and experience are thoroughly checked.
- Commitment to Excellence: By partnering only with providers who meet their high standards, Franance Health guarantees a level of expertise and dedication to patient well-being.
- Patient Trust and Safety: Their credentialing acts as a seal of approval, offering patients peace of mind and confidence in the care they receive.
- Access to Top Talent: Franance Health identifies and promotes skilled medical practitioners, making it easier for Ghanaians to find the best possible care for their needs.
- Industry Recognition: The Franance Health credential signifies a provider's adherence to ethical practices and a commitment to continuous professional development.
Scope Of Work For Genomics Core Facilities
This Scope of Work (SOW) outlines the technical deliverables and standard specifications for services provided by the Genomics Core Facilities. The core facility aims to provide researchers with access to cutting-edge genomic technologies and expertise, supporting a wide range of research projects. This SOW details the types of services offered, the expected quality standards, and the data outputs. The Genomics Core Facility is committed to high-quality, reproducible, and timely delivery of genomic data and analysis.
| Service Category | Technical Deliverable | Standard Specifications / Quality Control | Data Output Format |
|---|---|---|---|
| NGS Library Preparation | High-quality DNA/RNA libraries | Library yield > 5 ng/µL; Insert size distribution assessed by Bioanalyzer/TapeStation; QC pass rate > 95% | Sequencing-ready libraries |
| NGS Sequencing | Raw sequencing reads (FASTQ files) | Read length as per instrument specification (e.g., 150bp paired-end); Phred quality score > Q30 for > 80% of bases; Base call accuracy > 99.9% | FASTQ |
| Single-Cell Sequencing Library Prep | Single-cell barcoded libraries | High cell capture efficiency (>70%); Accurate barcode identification; UMIs well-represented | Sequencing-ready libraries |
| Long-Read Sequencing | Long contiguous DNA reads | Read length distribution suitable for genome assembly (e.g., >10 kb average); High raw read accuracy (>99%) | FASTQ or proprietary long-read formats (e.g., BAM) |
| Genotyping | Genotype calls for specified SNPs/regions | Call rate > 98%; Concordance > 99% with known samples or replicates | VCF, PLINK files |
| Gene Expression (RNA-Seq) | Alignment files (BAM/CRAM); Gene expression counts (UMI/TPM/FPKM) | Mapping rate > 90%; Ribosomal RNA depletion < 5%; Gene body coverage uniformity; Gene detection sensitivity | BAM/CRAM, TSV/CSV (counts), normalized expression values |
| Epigenetic Profiling (ChIP-Seq) | Peak calls (BED files); Normalized read coverage tracks | Peak FDR < 0.05; Signal-to-noise ratio evaluated; Peak annotation | BED, BigWig, TSV/CSV (peak summaries) |
| Bioinformatics Analysis | Quality control reports; Annotated variant/gene lists; Differential expression results; Pathway enrichment analyses; Genome assemblies | Standard bioinformatics pipelines; Reproducible analysis workflows; Clear documentation; Statistical significance thresholds (e.g., p-value < 0.05, FDR < 0.1) | Reports, tables (CSV/TSV), figures (PNG/PDF), annotated genome browsers |
| Consultation & Design | Experimental design proposals; Protocol recommendations; Data interpretation guidance | Based on project-specific needs; Clear communication and documentation of recommendations | Written reports, meeting minutes |
Services Offered by Genomics Core Facilities
- Next-Generation Sequencing (NGS) Library Preparation and Sequencing
- Single-Cell Sequencing Library Preparation and Sequencing
- Long-Read Sequencing Library Preparation and Sequencing
- Genotyping and SNP analysis
- Gene Expression Profiling (RNA-Seq, qPCR)
- Epigenetic Profiling (ChIP-Seq, ATAC-Seq, Bisulfite-Seq)
- Metagenomics and Microbiome Analysis
- Bioinformatics Support and Data Analysis
- Consultation and Experimental Design Services
Service Level Agreement For Genomics Core Facilities
This Service Level Agreement (SLA) outlines the response times and uptime guarantees for the Genomics Core Facilities. It is designed to ensure efficient operation and reliable access to services for all users.
| Service Category | Response Time (Business Days) | Uptime Guarantee (%) | Notes |
|---|---|---|---|
| Sequencing Services (Standard Projects) | 3-5 | 98.0% | Excludes instrument downtime due to maintenance or unforeseen issues. Turnaround time for data delivery will be communicated separately based on project complexity. |
| Sequencing Services (Rush Projects) | 1-2 | 95.0% | Subject to availability and additional fees. Higher probability of minor delays. |
| Genotyping Services | 5-7 | 97.5% | Turnaround time for data delivery will be communicated separately. |
| Data Analysis Services (Standard Requests) | 5-10 | 99.0% | Response time refers to initial contact and project scoping. Actual analysis time varies by complexity. |
| Data Analysis Services (Complex Projects) | 10-20 | 98.0% | Requires detailed consultation and project planning. Estimated completion times will be provided. |
| Sample Preparation & QC | 2-3 | 99.5% | Refers to the time to begin processing after sample receipt and approval. |
| Consultation & Training | 1-2 | N/A | Response time for scheduling and initial consultation. Uptime is not applicable for human-resource-dependent services. |
Scope of Services Covered
- Sequencing services (e.g., Next-Generation Sequencing, Sanger Sequencing)
- Genotyping services (e.g., SNP arrays, microsatellite analysis)
- Data analysis services (e.g., variant calling, RNA-Seq analysis)
- Sample preparation and quality control
- Consultation and training
Frequently Asked Questions

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